FLIPDock --
About FLIPDock	English (USA)
FLIPDock is short for Flexible LIgand-Protein Docking. In FLIPDock we include the receptor conformational changes into the docking process, rather than using multiple receptor structures (NMR, X-ray crystal or snapshots from molecular dynamics) or a pre- or post-optimization process. It avoids the problem of choosing the representative conformers for receptor molecules. Instead, the user is in charge of specifying the conformational subspace to explore in the docking process. FLIPDock can handle backbone flexibility as well as sidechain rearrangements. Details of the FLIPDock protocol can be found in the following paper: "FLIPDock: Docking flexible ligands into flexible receptors" Proteins: Structure, Function, and Bioinformatics 68(3):726-37, 2007 To see the collection of prior postings to the list, visit the FLIPDock Archives.
Using FLIPDock
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