ADL: segmentation fault with stacksize unlimited

Kay Gottschalk kay.gottschalk at weizmann.ac.il
Tue Sep 7 05:57:49 PDT 2004


Hi there,

I am getting a segmentation fault when using autogrid3 on OS X, with 
stacksize at max (65536 kbytes). The output of the log-file until the 
crash looks rather o.k., I think:
Atom no. 9607,  " C  "  at (-43.700, -6.565, 4.582),   was assigned 
atom type 1, "C".
Atom no. 9608,  " O  "  at (-44.811, -6.176, 4.134),   was assigned 
atom type 3, "O".
Atom no. 9609,  " OXT"  at (-43.078, -5.988, 5.514),   was assigned 
atom type 3, "O".

Maximum partial atomic charge found = +0.814 e
Minimum partial atomic charge found = -0.867 e

Atom    Atom    Number of this Type
Type     ID      in Macromolecule
____    ____    ___________________
  1       C                5027
  2       N                1332
  3       O                1490
  4       S                  47
  5       H                1713
  6       X                   0
  7       M                   0

Total number of atoms :         9609 atoms
Total charge :                  -9.00 e


Macromolecule coordinates fit within the following volume:


Any ideas?
Thanks,
Kay




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