ADL: autogrid3 command not found

Philip Crawford p.crawford at
Wed Apr 12 15:53:44 PDT 2006

Autodock and autogrid are part of a separate package you must apply for
permission to use. They don't come with ADT. When your application is
approved, you will be sent a location to download from.

Phil Crawford
Philip Crawford, B. Comp. Sc., MIEEE
School of Medical Sciences
The University of NSW
Phone: +61-2-9385 2564
Mobile: +61-419-294 698
Fax: +61-2-9385 1059
Email: p.crawford at

-----Original Message-----
From: autodock-bounces at [mailto:autodock-bounces at] On
Behalf Of Kirk Beebe
Sent: Thursday, 13 April 2006 3:24 AM
To: autodock at
Subject: ADL: autogrid3 command not found

Greetings ADT experts,

I am struggling to navigate within this unix environment to get adt 
running.  Currently I am running into trouble with autogrid.  I have 
installed the latest version of MGLTools (1.4.1 
complete2.4_binary_ppcDarwin8_acad_1.4.1) on a Mac OS X 10.4 and the 
installation appears to be successful.  I retrieved the ligand and protein 
files for the tutorial and everything was going as per this tutorial accept 
when I tried to run autogrid.

In the terminal window it states that the command is not found while the 
autodock process manager remains blank.  I assumed that autogrid was 
compiled with the MGLTools autodock package but I can not seem to find an 
executable within MGLTools.

Would anyone be so kind as to enlighten me.


Kirk Beebe

         Kirk Beebe, Ph.D.
         The Skaggs Institute for Chemical Biology
         The Scripps Research Institute
         10550 North Torrey Pines Road
         Mail Code #BCC-379
         La Jolla, CA 92037
         Phone: (858) 784-8985
         Fax: (858) 784-8990

--- ADL: AutoDock List  --- ---

More information about the autodock mailing list