ADL: help rna as ligand

genie lfs lfs.use at gmail.com
Wed Apr 26 07:33:22 PDT 2006


hello all..
i am trying to dock a rna molecule of 14 base pairs in to a protein molecule..
the problem is the no of possible free torsional angels is 32 and in
my case it comes around to be 86.. is there any way that i can get
around this problem..

can any one please suggest me a way to dock a rna molecule into a
protein molecule... if autodcok does not do it is there any other
software that can use..

i am using autodock 3.0.5 with adt as the graphical interface..

please help.
thanks in advance
santhu



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