ADL: peptide-protein docking

Carsten Baldauf carsten.baldauf at
Mon Jan 16 09:21:32 PST 2006

dear all//
my aim is to design peptide-ligands to a protein receptor. the peptide 
ligand has about 12 residues and contains
 non-natural amino acids. until now, i obtain not very encouraging 
results using Autodock. has anyone suggestions
for tweaking the input or other computational approaches to dock a 
peptide-like compound to a protein.
thanks in advance//

dr carsten baldauf
biotechnologisches zentrum der tu dresden

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