ADL: How to use atom distance as a filtering strategy

Hairat Sabit hairat at
Fri Oct 5 04:00:12 PDT 2007

Dear all,I am docking potential substrates into protease pocket. I want to use the distance of an atom in ligand and an atom in enzyme as a filtering criteria beside docking energy; however, I do not know how to auto-measure the distance of these two atoms in all the conformations generated by autodock4 ? Any suggestion will be very helpful.
Thank you in advanceHS
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