ADL: Problems in showing conformations

Константин Горемыкин covigo at mail.ru
Wed Feb 20 01:08:56 PST 2008



-----Original Message-----
From: "Antonio Cavazzuti" <acavazzuti at ipb.csic.es>
To: autodock at scripps.edu
Date: Tue, 19 Feb 2008 17:06:07 +0100
Subject: ADL: Problems in showing conformations

> 
> Hi, 
> I run ADT1.5, Autogrid4 and Autodock4 under Ubuntu. 
> After opening Autodock output (.dlg file) a windows appears suggesting to open 
> and analyze conformations using "Analyze>Conformations>Show conformations" , 
> but I can't find "Show conformation" button under Conformation submenu. 

Try "Analyze>Dockings>Open",
then "Analyze>Conformations>Play".

> 
> Another thing: How can I open "mv.docked.warning" in a python shell? Is the 
> first time that I use python (and linux..) and I ignore commands. 
> I open terminal shell,I enter"python"and I write "mv.docked.warning"... 
> here the answer: 
> 
>  antonio at afx:~$ python 
>  Python 2.5.1 (r251:54863, Oct  5 2007, 13:36:32) 
>  [GCC 4.1.3 20070929 (prerelease) (Ubuntu 4.1.2-16ubuntu2)] on linux2 
>  Type "help", "copyright", "credits" or "license" for more information. 
>  >>> my.docked.warning 
>  Traceback (most recent call last): 
>    File "<stdin>", line 1, in <module> 
>  NameError: name 'my' is not defined 
>  >>> 
> 
> How can I proceede? 
Maybe you wrote not "mv.docked.warning" but "my.docked.warning"?

> Thanks, 
> Antonio 
> 
> Instituto de Parasitologia y Biomedicina "Lopez-Neyra"
> Avda. Conocimiento S/N
> Parque Tecnologico Ciencias de la Salud
> 18100 Armilla - GRANADA
> Spain
> Tlf: 958181621
> Fax: 958181632
> http://www.ipb.csic.es
> --
> 
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