ADL: help

Deepthi Rajagopalan deepthi.86 at gmail.com
Sat Jan 19 00:13:08 PST 2008


Hi!
I am using autodock4. I am having problems when i run autogrid. it says
there is some problem with rigid file. could this be due to active site. I
mean.. i dont exactly know the active site of my protein, so I chose some
residue. could it be due to this??
the error message that I get is
/compute/deepthi/AUTODOCK/i86Linux2/autogrid4

/compute/deepthi/AUTODOCK/i86Linux2/autogrid4: ERROR:  can't find or open
receptor PDBQT file "protein_rigid.pdbqt".



/compute/deepthi/AUTODOCK/i86Linux2/autogrid4: ERROR:  Unsuccessful
completion.



why is this happening?
please help!!


-- 
Regards,
Deepthi


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