ADL: regarding conformation and clustering.

manvendra pratap singh manav_phd2007 at
Wed Jan 23 05:18:13 PST 2008

actually i m not understanding ur problem 
can u explain the same simply.
if i will understand i m sure that i will answer it ..

----- Original Message ----
From: Deepthi Rajagopalan <deepthi.86 at>
To: autodock at
Sent: Wednesday, 23 January, 2008 4:06:45 PM
Subject: ADL: regarding conformation and clustering.

I am at the moment going through autodock tutorial to really understand what
it is doing. I performed docking for the tutorial files  and I have obtained
the results. when I was looking at the conformations, i got ten
conformations and i tried clustering them and i obtained two clusters with
four in one cluster and 6 in other cluster. Then, i tried reclustering them,
this time I obtained eight clusters with one conformation each leading to
missing two conformations.why is this happening? I have no clue!!

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