ADL: Prepare all parameters

Jack Shultz jackygrahamez at
Sun Jan 27 17:43:13 PST 2008

There may be an easier way. Not sure if I've handled the tors properly...
I managed to get the basic functionality of prepare_ligand4,
prepare_receptor4 and prepare_gpf4...still trying to get prepare_dpf4

Here is the command line that works on the script bellow
pythonsh -l nsc19892.mol2 -r 1tfw.pdb

When I try to include the code for prepare_dpf in this script

I get these errors
Traceback (most recent call last):
  File "", line 460, in ?
  File "", line 75, in set_ligand
    self.dpo['ndihe']['value'] = self.ligand.parser.keys.count("BRANCH")
AttributeError: Mol2Parser instance has no attribute 'keys'

On Jan 26, 2008 6:26 PM, Jack Shultz <jackygrahamez at> wrote:

> I'm interested in developing one script that combines the functionality of
> prepare_ligand4, prepare_receptor4, prepare_gpf4 and prepare_dpf4...that
> way
> I can supply the parameters for all four at once.
> Any logistical issues in doing this?
> Jack
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