ADL: PDBQT for receptor

deepti nayar deeptinayar at
Mon Mar 3 03:33:28 PST 2008

hi all

I am using autodock for the first time. Just to be comfortable with the
program first, I am trying a simple docking. I am just simply trying to dock
the ligand into the receptor. I dont know where do I go wrong and thus I am
not able to generate the PDBQT file for the receptor. As a result of this,
the grid sets up around ligand and not into the active site of the protein.
Kindly help.

Deepti Nayar
Research Assistant
Bioinformatics Center
New Delhi
e-mail: deeptinayar at

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