ADL: pdb files

Steven Platt Steven.Platt at
Wed Mar 5 02:14:25 PST 2008

I've found the PRODRG server to be pretty good, although it only
generates PDBQ files for AutoDock v2.4 & v3.0

Otherwise try looking at existing small molecule databases as they might
already have what you need.

Super Drug DB
Protein Ligand DB


Steven Platt
Bioinformatics Support Co-ordinator
Statistics, Modelling & Bioinformatics
Health Protection Agency
61 Colindale Avenue
-----Original Message-----
From: autodock-bounces at [mailto:autodock-bounces at]
On Behalf Of Hairat Sabit
Sent: 05 March 2008 03:26
To: autodock at
Subject: ADL: pdb files

Dear all,
What are the good softwares (free) to generate small molecules .pdb or
.mol2 files for Autodock?I appreciate your inputs.Hairat
Shed those extra pounds with MSN and The Biggest Loser!
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