ADL: free pdb file creation

Larry Layne llayne at
Wed Mar 5 15:17:09 PST 2008


I've found that The Dundee PRODRG Server ( has a nice program that allows you to create PDB files among other popular types.  By clicking on the "draw molecule with JME" link, it will input the structure into the text box further down the screen and then give you the choice in the type of file format you want it in.  I found it to be very good when I need a program to  preserve conjugated aromatic carbons.  All they ask for in return is to cite them in any publications.  

Happy Docking!
> ----------------------------------------------------------------------
> Message: 1 Date: Wed, 5 Mar 2008 03:26:23 +0000 From: Hairat Sabit
> <hairat at> Subject: ADL: pdb files To: <autodock at> 
> Message-ID: <BAY140-W3932DA4E36AFC69350CC1C8110 at phx.gbl> Content-Type:
> text/plain; charset="iso-8859-1"
> Dear all, What are the good softwares (free) to generate small molecules
> .pdb or .mol2 files for Autodock?I appreciate your inputs.Hairat 
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