ADL: "pdbcen" function

Antonio Cavazzuti acavazzuti at
Tue Mar 11 08:21:16 PDT 2008

I am using Autodock4 Autogrid4 and ADT 1.5 under Ubuntu. I had problems with
grid setting up. Tee Piroj (thanks you!!) previously suggested me to use
"pdbcen" command to obtain center of binding site and put them in grid
dialogue box. 
Finally I had to manually calculate center of binding site because "pdbcen"
doesn't work.. I open a terminal windows, I change directory where my pdb file
is and I enter

pdbcen myfile.pdb

..but the answer is "command not found"

How can I solve this? 
Thanks in advance,

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