ADL: "pdbcen" function
tee_piorj at yahoo.com
Tue Mar 11 22:30:38 PDT 2008
Hello, Antonio Cavazzuti
Again you should solve this problem with these command:
$ln -s /usr/local/dist305/share/pdbcen pdbcen
This commamd is a link command (ln). This put link of pdbcen command into bin directory. Try typing pdbcen again. It gonna work.
----- Original Message ----
From: Antonio Cavazzuti <acavazzuti at ipb.csic.es>
To: autodock at scripps.edu
Sent: Tuesday, March 11, 2008 10:21:16 PM
Subject: ADL: "pdbcen" function
I am using Autodock4 Autogrid4 and ADT 1.5 under Ubuntu. I had problems with
grid setting up. Tee Piroj (thanks you!!) previously suggested me to use
"pdbcen" command to obtain center of binding site and put them in grid
Finally I had to manually calculate center of binding site because "pdbcen"
doesn't work.. I open a terminal windows, I change directory where my pdb file
is and I enter
...but the answer is "command not found"
How can I solve this?
Thanks in advance,
Instituto de Parasitologia y Biomedicina "Lopez-Neyra"
Avda. Conocimiento S/N
Parque Tecnologico Ciencias de la Salud
18100 Armilla - GRANADA
--- ADL: AutoDock List --- http://autodock.scripps.edu/mailing_list ---
Looking for last minute shopping deals?
Find them fast with Yahoo! Search. http://tools.search.yahoo.com/newsearch/category.php?category=shopping
More information about the autodock