ADL: (no subject)
qiaoyan at dicp.ac.cn
Fri Mar 28 07:16:54 PDT 2008
What is the exact meaning by saying "merge the non-polar hydrogen" in
autodock mannual? Does it means that if there are two hydrogen atoms( one
polar, the other non-polar ) which are near to each other, e.g
-C-N-HN , then HN and HC can be treated as
one hydrogen atom as -C-N-HN ?
I used the ADT to prepare my pdb files and to generate rec_rigid.pdbqt
file. But I noticed some strage bonds as above in the sidechain of LYS and
Any suggestion is greatly appreciated.
Thanks for the time.
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