ADL: don't cluster

qiaoyan qiaoyan at
Sat Mar 29 19:26:24 PDT 2008


  Thank you very much, I have saved the docked conformation successfully,
then I put the pdb file in the pymol to see clearly. I select the dpf
parameter as follow: 

outlev 0   

ga_num_evals 2500000                 

ga_pop_size 1000                      

ga_num_generations 27000 

  ga_elitism 1  

  ga_run 50

but it formed many clusters, only three clusters have  two conformations ,
the others have only one conformation each and the cluster rmsd=0

I am very curious,are the parameters I set are not correct ? please give me
some suggestions. Thank you .




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