ADL: running vina

mallika shetty mallika_bits2005 at yahoo.co.in
Mon Apr 6 21:36:31 PDT 2009


hi 
I am new to vina can anybody explain me how to write script and how to execute for docking morethan one ligand with receptor.

Thank you

--- On Fri, 6/3/09, awantika shrivastava <awantika31 at hotmail.com> wrote:

From: awantika shrivastava <awantika31 at hotmail.com>
Subject: Re: ADL: running vina
To: autodock at scripps.edu, trott at scripps.edu
Date: Friday, 6 March, 2009, 8:43 AM


Hi!!!!

 

Thanx a lot for ur help!!!!!! I am able to run now ...

 

 

 

Best Regards

 

 

Awantika shrivastava
 
> Date: Thu, 5 Mar 2009 09:23:43 -0800
> From: trott at scripps.edu
> To: autodock at scripps.edu
> Subject: Re: ADL: running vina
> 
> On Thu, Mar 5, 2009 at 3:51 AM, awantika shrivastava
> <awantika31 at hotmail.com> wrote:
> 
> >
> > C:\Documents and Settings\preeti\The Scripps Research Institute\Vina>--config conf.txt --log log.txt
> >
> 
> It appears that you are trying to run a program called "--config"
> instead of "vina.exe"
> 
> >
> > Command line parse error: unknown option -l
> >
> 
> I guess you used "-log" instead of "--log". Single dashes start
> single-character options. So the parser assumes you are trying to give
> an option "-l", which Vina does not accept.
> 
> > Configuration file parse error: unknown option Receptor
> 
> I guess you used "Receptor" instead of "receptor" in your
> configuration file (isn't it obvious from the error message?)
> 
> Oleg
> 
> 
> -- 
> Oleg Trott, Ph.D. (Columbia University)
> 
> http://olegtrott.com
> ________________________________________________
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