ADL: about vina input

Gonçalo C. Justino goncalo.justino at gmail.com
Thu Apr 16 09:43:06 PDT 2009


Dear all,

I've been playing around with Vina and I'm quite fascinated by its behaviour
so far. There is just this basic question that keeps coming back. While
defining the input, I'm been using

--center_x 0 --center_y 0 --center_z 0 --size_x 120 --size_y 120 --size_z
120

and my question is: this corresponds to a "box" centered at (0,0,0) with a
"box" of 120 or with a "box side" of 60 ? Or is this the wrongest possible
interpretation?

Any comments are welocme,

Gonçalo





-- 
Gonçalo Justino, Ph.D.
----------------------------------------------------
[Computational & Radical BioChemistry]
Requimte/CQFB - Department of Chemistry
Faculty of Sciences and Technology
New University of Lisbon
2829-516 Caparica
Portugal
Phone: (+351) 212 948 300 ext. 10971
Fax: (+351) 212 948 550
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