ADL: Differences betwn cluster and reference rmsd

Sharath Roy royshari87 at yahoo.in
Mon Apr 20 22:16:18 PDT 2009


Can some one tell the exact difference btwn Cluster and reference rmsd obtained in the dlg file.....

As far as i can see, cluster refers to the deviation among the cluster itself i.e in a cluster, there will be different number of conformers obtained......so its the rmsd btwn any 2 among the same cluster...........

One more Reference is probably there would be a seed conformer based on which the the deviation in terms of other conformers is defined..........

Kindly correct if its wrong..........



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