ADL: Docking of ligand in a particular pose

Laura Lowe Furge lfurge at sbcglobal.net
Mon Oct 5 11:29:31 PDT 2009


Here are some "in house" directions my lab uses, Good luck,
LLF




On Oct 5, 2009, at 1:41 AM, Vikash kumar wrote:

> Hi All
>
> I want to dock the ligand in a particular binding site and in a  
> particular
> orientation. Because binding mode of the same ligand in different  
> protein
> is known. Anyone please guide me how to do this by using AutoDock  
> 4. Any
> help will be highly appreciated.
>
> --
> Thanks
> With Regards
>
> Biotechnology
> School of Biosciences & Bioengg.
> IIT Bombay
> Powai
> Mumbai-400076
> India
> Contact no. 09819442221
> ________________________________________________
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Laura Lowe Furge, Ph.D.
Associate Professor
Department of Chemistry
Kalamazoo College
1200 Academy Street
Kalamazoo, MI 49080

Phone: 269-337-7020
FAX: 269-337-7251
email: lfurge at kzoo.edu






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