ADL: How to include crystallized waters in docking studies

ankita kumari akku8j at
Sat Mar 6 05:28:00 PST 2010

To all users

As we see sometimes proteins are crystallized with few  molecules of water.
but  when we do protein preparation for docking we remove those water

So is there any method  by which i can include these crystallized water
molecules in my docking studies using auto dock. how can i define these
water molecules while docking or preparing input files?



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