ADL: python error Herlp Requested

Phil Cunningham phil.cunningham at kcl.ac.uk
Mon Sep 6 03:45:05 PDT 2010


Hi
I havent used adt for a wee while and am having trouble .....

I am using a Model protein
I am using SUSE linnux 9.2
and ADT with Autodock 3.0.5

the problem -
I read the protein
Load /repair missing atoms
edit charges / compute gasteiger / check totals on residues ? spread on 
all atoms
edit hydrogens  / add polar only
Save /write PDB file


WHen I come to generating the pdbqs file (from grid /macro molecule choose)
I get a python error report

I have tried this a number of times in various combinations and cant see 
the error of my ways

Perhaps you would be able to advise me on a way forward

The python error report with both the source and the generated pdb files 
attached

many thanks

Phil

-- 
Phil Cunningham
Senior Bioinformatics Officer
Room 3.157 Franklin Wilkins Building
Department of Biochemistry
King's College University of London
150 Stanford Street
London SE1 9NH

tel 020 7848 4239
fax 020 7848 4500

email phil.cunningham at kcl.ac.uk

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