ADL: grid dimentions

hamed ali hamed_ali37 at yahoo.com
Tue Sep 21 14:58:30 PDT 2010


Dear colleagues
Kindly tell me How to modify my grid dimentions in AutoDock 4.2 version as
 I already used 85 angestroms for each direaction in grid box option, However after Autogrid I got results as:
Number of grid points in x-direction: 65
Number of grid points in y-direction: 65
Number of grid points in z-direction: 65
 
Please help me how to change that to get higher dimentions
Best reagrds
Dr. Hamed Ismail


--- On Tue, 9/21/10, autodock-request at scripps.edu <autodock-request at scripps.edu> wrote:


From: autodock-request at scripps.edu <autodock-request at scripps.edu>
Subject: autodock Digest, Vol 73, Issue 14
To: autodock at scripps.edu
Date: Tuesday, September 21, 2010, 3:00 PM


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Today's Topics:

   1. Re:  Method of covalent docking (Nok :p)
   2. Re:  Method of covalent docking (hamze rahimi)


----------------------------------------------------------------------

Message: 1
Date: Tue, 21 Sep 2010 02:45:48 +0000
From: "Nok :p" <justmin28 at hotmail.com>
Subject: Re: ADL: Method of covalent docking
To: autodock <autodock at scripps.edu>
Message-ID: <BAY146-w1089AED398A9C930A7EAEDB77F0 at phx.gbl>
Content-Type: text/plain; charset="windows-874"


Dear Rudy,



Thanks you very much for your good suggestion.



Best regards,



Nok

                          

------------------------------

Message: 2
Date: Tue, 21 Sep 2010 00:32:23 -0700
From: hamze rahimi <buksanbio at gmail.com>
Subject: Re: ADL: Method of covalent docking
To: autodock at scripps.edu
Message-ID:
    <AANLkTinzjGTi8Wb=p94XT=KiCdD9MLfhO4UO0=+r-s3u at mail.gmail.com>
Content-Type: text/plain; charset=ISO-8859-1

Dear expert

hi.you can use GROMACS or NAMD package for MD of proteins.then resulted dpb
introduce for docking.
best wish

2010/9/20 Nok :p <justmin28 at hotmail.com>

>
> Dear Rudy,
>
>
>
> Thanks you very much for your good suggestion.
>
>
>
> Best regards,
>
>
>
> Nok
>
>
> ________________________________________________
> --- ADL: AutoDock List  --- http://autodock.scripps.edu/mailing_list ---
>



-- 
Yours sincerely
Rahimi Hamzeh
PhD student in Medical Biotechnology
Pasteur institute of iran
e mail:
buksanbio at gmail.com
hamzebiotech at gmail.com
Tel: 09125975321


------------------------------

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