ADL: grid dimentions

Nok :p justmin28 at hotmail.com
Tue Sep 21 23:29:01 PDT 2010


Dear Dr. Hamed Ismail

 

You can modify the size of grid box by:

 

Grid -> grid box-> you will see the wheel of x, y, z that you can modify the size of grid box 

 

then you will save the new dimention by:

 

File -> close saving current

 

Alternative way, you can also modify the size of grid in the file.gpf

 

Best regards,

 

Jiraporn
 
> Date: Tue, 21 Sep 2010 14:58:30 -0700
> From: hamed_ali37 at yahoo.com
> To: autodock at scripps.edu
> Subject: ADL: grid dimentions
> 
> Dear colleagues
> Kindly tell me How to modify my grid dimentions in AutoDock 4.2 version as
>  I already used 85 angestroms for each direaction in grid box option, However after Autogrid I got results as:
> Number of grid points in x-direction: 65
> Number of grid points in y-direction: 65
> Number of grid points in z-direction: 65
>  
> Please help me how to change that to get higher dimentions
> Best reagrds
> Dr. Hamed Ismail
> 
> 
> --- On Tue, 9/21/10, autodock-request at scripps.edu <autodock-request at scripps.edu> wrote:
> 
> 
> From: autodock-request at scripps.edu <autodock-request at scripps.edu>
> Subject: autodock Digest, Vol 73, Issue 14
> To: autodock at scripps.edu
> Date: Tuesday, September 21, 2010, 3:00 PM
> 
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>    1. Re:  Method of covalent docking (Nok :p)
>    2. Re:  Method of covalent docking (hamze rahimi)
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> ----------------------------------------------------------------------
> 
> Message: 1
> Date: Tue, 21 Sep 2010 02:45:48 +0000
> From: "Nok :p" <justmin28 at hotmail.com>
> Subject: Re: ADL: Method of covalent docking
> To: autodock <autodock at scripps.edu>
> Message-ID: <BAY146-w1089AED398A9C930A7EAEDB77F0 at phx.gbl>
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> 
> Dear Rudy,
> 
> 
> 
> Thanks you very much for your good suggestion.
> 
> 
> 
> Best regards,
> 
> 
> 
> Nok
> 
>                           
> 
> ------------------------------
> 
> Message: 2
> Date: Tue, 21 Sep 2010 00:32:23 -0700
> From: hamze rahimi <buksanbio at gmail.com>
> Subject: Re: ADL: Method of covalent docking
> To: autodock at scripps.edu
> Message-ID:
>     <AANLkTinzjGTi8Wb=p94XT=KiCdD9MLfhO4UO0=+r-s3u at mail.gmail.com>
> Content-Type: text/plain; charset=ISO-8859-1
> 
> Dear expert
> 
> hi.you can use GROMACS or NAMD package for MD of proteins.then resulted dpb
> introduce for docking.
> best wish
> 
> 2010/9/20 Nok :p <justmin28 at hotmail.com>
> 
> >
> > Dear Rudy,
> >
> >
> >
> > Thanks you very much for your good suggestion.
> >
> >
> >
> > Best regards,
> >
> >
> >
> > Nok
> >
> >
> > ________________________________________________
> > --- ADL: AutoDock List  --- http://autodock.scripps.edu/mailing_list ---
> >
> 
> 
> 
> -- 
> Yours sincerely
> Rahimi Hamzeh
> PhD student in Medical Biotechnology
> Pasteur institute of iran
> e mail:
> buksanbio at gmail.com
> hamzebiotech at gmail.com
> Tel: 09125975321
> 
> 
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> End of autodock Digest, Vol 73, Issue 14
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