ADL: 1AIK structure

Kukol, Andreas a.kukol at herts.ac.uk
Thu Sep 30 00:54:38 PDT 2010


I am not sure about removing side chains, but the most easy way to remove parts of the protein including side chains is with a text editor, such as WordPad or Notepad++.

Andreas

> -----Original Message-----
> From: autodock-bounces at scripps.edu [mailto:autodock-bounces at scripps.edu] On
> Behalf Of chandra shekhar
> Sent: 30 September 2010 08:00
> To: autodock at scripps.edu
> Subject: Re: ADL: 1AIK structure
>
> use pymol for removing side chains
>
> On Thu, Sep 30, 2010 at 12:27 PM, Onur Alten
> <onuralten1983 at hotmail.com>wrote:
>
> >
> > Hello everyone. I have used the protein structure 1AIK for docking. I
> > download it as a biological unit from rscb. It contains 3 N-helix and 3
> > C-helix. I want to remove one of the C-helix.
> > How can I make it with autodock?
> > Many thanks
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> >
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