ADL: Docking prediction MHC-nonamero

hugo hvaldivia0 at gmail.com
Wed Nov 16 08:22:56 PST 2011


Docking prediction MHC-nonamero 

When I use a crystal MHC - nonamero, and I will like reproduce docking MHC I
- nonamero with AutoDock 4.2, the results are very bad, the ligand's
conformations becomes is far removed the glass, and outside the binding
pocket, with binding energy of -7 and RMSD of 4 - 3, please if you know what
parameters must be taken into account for this type of docking.

thank you


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