ADL: issue with pubchem library

Saurav Saha sauravsaha at
Wed Feb 8 00:54:52 PST 2012

Dear everybody,

I have encountered a problem regarding pubchem database. These are the steps that i have followed:

1. Go to Pubchem and click on the "Advanced search" link.

 In the "MolecularWeight from" field put 0, and press "Go" button. This 
is just a trick to get all compounds from Pubchem with a defined 
structure (>30 million)

3. On the right side of the page click on the number which is right of "Pharmacological Actions" link (11,342 as of today)

4. On the right side of the page, click on  "Structure Download..."

 The "Pubchem Download Service" opens for you. Click the "Retrieve 3D 
records/images?" checkbox and then the "Download" button.

but when i checked the downloaded data i found just 6407 compounds. Please help.

Thanks in advance.

Saurav B. Saha

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