ADL: Request for help protein protein docking

filip fratev filipfratev at yahoo.com
Thu Feb 23 00:22:13 PST 2012


Dear Shashank,
Just use their web server:
http://haddock.science.uu.nl/services/HADDOCK/haddock.php

You will need only to specify PDBid's or upload your files. Then you need to specify residues that involve in the protein-protein binding. The calculation will take about 1 day. 

I've used HEX and many others, but my advice is the above solution. 


Regards,
Filip


________________________________
 From: shashank rana <shashank.bioinfo at gmail.com>
To: autodock at scripps.edu; filip fratev <filipfratev at yahoo.com> 
Sent: Thursday, February 23, 2012 9:18 AM
Subject: Re: ADL: Request for help protein protein docking
 




Hi Dear friend,
>I want joint 2 different proteins on their opposite terminal end(N and C).
>Pls could you tell me some software which i use and if you know protocol related to query pls send me.
    Pls sed me link of HADDOCK .

>
>Regards,
>Shashank
>
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