ADL: problem in docking result visualization

NUTAN CHAUHAN nutanbt at yahoo.co.in
Mon Feb 27 23:38:15 PST 2012


I am using Autodock Vina for docking my ligands to the receptor. I ve got the docking result file mentioning few models in txt format. but it only shows coordinates for ligand and not for docking complex. How can i find and visualize the docking complex?
Regards,
 
Nutan Chauhan
Research Scholar
Department of Biotechnology
BIT, Mesra
Ranchi-835215, Jharkhand


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Today's Topics:

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   2. Re:  (no subject) (Juan)
   3. Re:  (no subject) (Jale Guler)


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Message: 1
Date: Mon, 27 Feb 2012 20:32:06 +0330
From: Zahra Toobaei <zzztoobaei at gmail.com>
Subject: ADL: (no subject)
To: autodock at scripps.edu
Message-ID:
    <CAJ0PrsRstT6NHWi19r4F_2dBLrG5SJxu5fc7TBdh58sQW=LEdA at mail.gmail.com>
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plz help me.i installed the ADT but it dosent strat.what should i do?


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Message: 2
Date: Mon, 27 Feb 2012 14:16:19 -0300
From: Juan <juan.5ht at gmail.com>
Subject: Re: ADL: (no subject)
To: autodock at scripps.edu
Message-ID:
    <CADK_URpnMJyaQ+3pxMTqA=OqcgRYvfS5A+Z2Rh0h18N2ME-kdg at mail.gmail.com>
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Hi!

What version of ADT have you installed? MGL Tools 1.5.4 has some starting
problems on some machines.
Give a try to the 1.5.6 RC3
http://mgltools.scripps.edu/downloads/mgltools-1-5-6-release-candidate

El 27 de febrero de 2012 14:02, Zahra Toobaei <zzztoobaei at gmail.com>escribi?:

> plz help me.i installed the ADT but it dosent strat.what should i do?
> ________________________________________________
> --- ADL: AutoDock List  --- http://autodock.scripps.edu/mailing_list ---
>

-- 
Farm. Juan Jos? Casal
PhD Student
Facultad de Farmacia y Bioqu?mica - Universidad de Buenos Aires - Argentina
Qu?mica Org?nica II
Jun?n 956 - Ciudad Aut?noma de Buenos Aires
Tel: 4964-8251


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Message: 3
Date: Mon, 27 Feb 2012 21:02:49 +0200
From: Jale Guler <jaleguler at gmail.com>
Subject: Re: ADL: (no subject)
To: "autodock at scripps.edu" <autodock at scripps.edu>
Message-ID: <21B4D9F7-BD92-43F8-A6A8-B35C5D61CF3A at gmail.com>
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It is selinux problem.Adjust selinux as permitive mode.



Uzm.Veteriner Jale Guler

27.?ub.2012 tarihinde 19:02 saatinde, Zahra Toobaei <zzztoobaei at gmail.co 
m> ?unlar? yazd?:

> plz help me.i installed the ADT but it dosent strat.what should i do?
> ________________________________________________
> --- ADL: AutoDock List  --- http://autodock.scripps.edu/mailing_list  
> ---



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