ADL: problem in docking result visualization

Sushil Mishra sushilbioinfo at gmail.com
Mon Feb 27 23:43:01 PST 2012


Hello Nutan:
I personally like PyMol for visualizing AutoDock results. You can load all
the conformation by loading _out.pdbqt file from Vina. There you can play
and visualize all the docked conformation.

HTH
Sushil


On Tue, Feb 28, 2012 at 8:38 AM, NUTAN CHAUHAN <nutanbt at yahoo.co.in> wrote:

> I am using Autodock Vina for docking my ligands to the receptor. I ve got
> the docking result file mentioning few models in txt format. but it only
> shows coordinates for ligand and not for docking complex. How can i find
> and visualize the docking complex?
> Regards,
>
> Nutan Chauhan
> Research Scholar
> Department of Biotechnology
> BIT, Mesra
> Ranchi-835215, Jharkhand
>
>
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> Subject: autodock Digest, Vol 90, Issue 6
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> Message: 1
> Date: Mon, 27 Feb 2012 20:32:06 +0330
> From: Zahra Toobaei <zzztoobaei at gmail.com>
> Subject: ADL: (no subject)
> To: autodock at scripps.edu
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> plz help me.i installed the ADT but it dosent strat.what should i do?
>
>
> ------------------------------
>
> Message: 2
> Date: Mon, 27 Feb 2012 14:16:19 -0300
> From: Juan <juan.5ht at gmail.com>
> Subject: Re: ADL: (no subject)
> To: autodock at scripps.edu
> Message-ID:
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> Hi!
>
> What version of ADT have you installed? MGL Tools 1.5.4 has some starting
> problems on some machines.
> Give a try to the 1.5.6 RC3
> http://mgltools.scripps.edu/downloads/mgltools-1-5-6-release-candidate
>
> El 27 de febrero de 2012 14:02, Zahra Toobaei <zzztoobaei at gmail.com
> >escribi?:
>
> > plz help me.i installed the ADT but it dosent strat.what should i do?
> > ________________________________________________
> > --- ADL: AutoDock List  --- http://autodock.scripps.edu/mailing_list ---
> >
>
> --
> Farm. Juan Jos? Casal
> PhD Student
> Facultad de Farmacia y Bioqu?mica - Universidad de Buenos Aires - Argentina
> Qu?mica Org?nica II
> Jun?n 956 - Ciudad Aut?noma de Buenos Aires
> Tel: 4964-8251
>
>
> ------------------------------
>
> Message: 3
> Date: Mon, 27 Feb 2012 21:02:49 +0200
> From: Jale Guler <jaleguler at gmail.com>
> Subject: Re: ADL: (no subject)
> To: "autodock at scripps.edu" <autodock at scripps.edu>
> Message-ID: <21B4D9F7-BD92-43F8-A6A8-B35C5D61CF3A at gmail.com>
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>
> It is selinux problem.Adjust selinux as permitive mode.
>
>
>
> Uzm.Veteriner Jale Guler
>
> 27.?ub.2012 tarihinde 19:02 saatinde, Zahra Toobaei <zzztoobaei at gmail.co
> m> ?unlar? yazd?:
>
> > plz help me.i installed the ADT but it dosent strat.what should i do?
> > ________________________________________________
> > --- ADL: AutoDock List  --- http://autodock.scripps.edu/mailing_list
> > ---
>
>
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