ADL: MGLTools-1.5.4 starting error

Lirong Chen lchen17 at gsu.edu
Sat Oct 27 08:07:04 PDT 2012


Hi Stefano,

Thanks for your advice. I did follow your instruction and installed MGLTools-1.5.6. When I run, it shown error below:

$ adt &
[1] 10422
~$ setting PYTHONHOME environment
Run ADT from  /home/MGLTools-1.5.6rc3/MGLToolsPckgs/AutoDockTools
~$ Resource file used to customize PMV: /home/.mgltools/1.5.6rc3/Pmv/_pmvrc
Xlib:  extension "NV-GLX" missing on display "localhost:10.0".
opengl extension not present, SSAO disable
opengl extension GL_EXT_packed_depth_stencil is not present
Xlib:  extension "NV-GLX" missing on display "localhost:10.0".
Xlib:  extension "NV-GLX" missing on display "localhost:10.0".

Then it just hanging there.

Any suggestions?

Also, it seems that MGLTools only support windows 32-bits system. Do you know whether it can be installed in Windows-7 with 64-bits system?

Thank you very much!

Lirong Chen, Ph.D
Sr. Research Scientist
531 Science Annex
431 Natural Science Center
Dept of Chemistry
Georgia State University
Atlanta, GA 30302
Tel: 706-296-1606/Cell
Email: lchen17 at gsu.edu

________________________________________
From: autodock-bounces at scripps.edu [autodock-bounces at scripps.edu] on behalf of Stefano Forli [forli at scripps.edu]
Sent: Wednesday, October 24, 2012 4:30 PM
To: autodock at scripps.edu
Subject: Re: ADL: MGLTools-1.5.4 starting error

Hi,

try the new release candidate and see if the problem persists:

http://mgltools.scripps.edu/downloads/mgltools-1-5-6-release-candidate

Stefano

On 10/23/2012 10:27 AM, L Chen wrote:
> Hi there,
>
> I installed MGLTools-1.5.4 in ubuntu 12.04 machine. The 1st try to run
> adt and get error messages below:
>
> $ adt&
> [1] 2095
> $ setting PYTHONHOME environment
> Run AutoDockTools from
> /home/MGLTools-1.5.4/mgltools_x86_64Linux2_1.5.4/MGLToolsPckgs/AutoDockTools
> Resource file used to customize PMV: /home/.mgltools/1.5.4/Pmv/_pmvrc
> Traceback (most recent call last):
>     File
> "/home/MGLTools-1.5.4/mgltools_x86_64Linux2_1.5.4/MGLToolsPckgs/AutoDockTools/__init__.py",
> line 373, in runADT
>       title=title, withShell= not interactive, verbose=False)
>     File
> "/home/MGLTools-1.5.4/mgltools_x86_64Linux2_1.5.4/MGLToolsPckgs/Pmv/moleculeViewer.py",
> line 315, in __init__
>       verbose=verbose, trapExceptions=trapExceptions)
>     File
> "/home/MGLTools-1.5.4/mgltools_x86_64Linux2_1.5.4/MGLToolsPckgs/ViewerFramework/VF.py",
> line 345, in __init__
>       verbose=verbose)
>     File
> "/home/MGLTools-1.5.4/mgltools_x86_64Linux2_1.5.4/MGLToolsPckgs/ViewerFramework/VFGUI.py",
> line 277, in __init__
>       cnf = {"addScenarioButton": False})
>     File
> "/home/MGLTools-1.5.4/mgltools_x86_64Linux2_1.5.4/MGLToolsPckgs/DejaVu/Viewer.py",
> line 675, in __init__
>       cp = ClippingPlane(self.rootObject, i, self)
>     File
> "/home/MGLTools-1.5.4/mgltools_x86_64Linux2_1.5.4/MGLToolsPckgs/DejaVu/Clip.py",
> line 42, in __init__
>       self.id = self.clipPlaneNames[num]
> IndexError: list index out of range
>
> Any help would be highly appreciated.
>
> Thanks!
>
> L Chen
>
> ________________________________________________
> --- ADL: AutoDock List  --- http://autodock.scripps.edu/mailing_list ---

--
  Stefano Forli, PhD

  Staff Scientist
  Molecular Graphics Laboratory
  Dept. Molecular Biology,  MB-112F
  The Scripps Research Institute
  10550  North Torrey Pines Road
  La Jolla,  CA 92037-1000,  USA.

     tel: (858) 784-2055
     fax: (858) 784-2860
     email: forli at scripps.edu
     http://www.scripps.edu/~forli/
________________________________________________
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