ADL: about flexible docking

Hatice Can alphacan2000 at
Thu Dec 12 23:42:31 PST 2013

Dear All,
We used AutoDock Vina for our co-factor docking to the different mutants of the enzyme.
The active site of enzyme  and the ligand which is co-factor were flexible. In the case of flexibility, after docking process, some parts of the aminoacids in the active site were cutted and one of the aminoacid was disappeared. Actually, we want to see all of the aminoacid which were taken placed at the beginning of the docking.How can we solve this problem. 
Many thanks and kind regrads

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