ADL: Vina: atom not found in this branch
Lucrezi, Jacob D
jlucrezi3 at gatech.edu
Tue Jun 18 12:34:46 PDT 2013
I am using AutoDock Vina and trying to dock staurosporine and I receive the following error when I try to run Vina: atom 34 has not been found in this branch. I made the pdb file for staurosporine in ChemBio3D Ultra and minimized the energy. I have had no problem with other ligands using the same method. I even tried downloading a Chemdraw file of staurosporine but I got the same error message. The atom it is referring to is the bridging oxygen. Any help is appreciated.
Georgia Institute of Technology
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