ADL: Vina: atom not found in this branch
DouglasR.Houston at ed.ac.uk
Wed Jun 19 02:00:51 PDT 2013
I too found this error a while ago, I should have posted it. I recall
that Autodock docks staurosporine without complaint ...
Quoting Ruth Huey <rhuey at scripps.edu> on Tue, 18 Jun 2013 14:05:12 -0700:
> Hi Jacob,
> Here is the file...
> From: autodock-bounces at scripps.edu [autodock-bounces at scripps.edu] On
> Behalf Of Lucrezi, Jacob D [jlucrezi3 at gatech.edu]
> Sent: Tuesday, June 18, 2013 12:34 PM
> To: autodock at scripps.edu
> Subject: ADL: Vina: atom not found in this branch
> I am using AutoDock Vina and trying to dock staurosporine and I
> receive the following error when I try to run Vina: atom 34 has not
> been found in this branch. I made the pdb file for staurosporine in
> ChemBio3D Ultra and minimized the energy. I have had no problem
> with other ligands using the same method. I even tried downloading
> a Chemdraw file of staurosporine but I got the same error message.
> The atom it is referring to is the bridging oxygen. Any help is
> Thank you,
> Jacob Lucrezi
> Georgia Institute of Technology
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Dr. Douglas R. Houston
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