ADL: autodock Digest, Vol 111, Issue 10

Homa Nameni nameni_homa at
Tue Nov 19 05:44:13 PST 2013

i have problem with autogrid4

traceback (most recent call last):
file "c:\program files\MGLTOOLS_1.5.6\libe\site_packages\viewerframework\VF.PY"
line 898, in tryto
result= command (*args, **kw)
file "c:\program files\MGLTOOLS_1.5.6\libe\site_packages\autodocktools\" ,line 964, in doit
ps=subprocess.popen (args)

file "c:\program files\MGLTOOLS_1.5.6\libe\", line 594, in _init_e_erread, errwite)

file "c:\program files\MGLTOOLS_1.5.6\libe\", line 816,in _execute_child startupinfo)
windowsError:[Error 2] the system cannot find the file specified

On Monday, 18 November 2013 11:30 PM, "autodock-request at" <autodock-request at> wrote:
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Today's Topics:

   1. Re:  ADT4.2: List of contacts (darel_am)
   2.  Error in Edit -> bonds -> remove bonds (Mahesh)


Message: 1
Date: Mon, 18 Nov 2013 07:06:24 -0800 (PST)
From: darel_am <darel.macdonald at>
Subject: Re: ADL: ADT4.2: List of contacts
To: autodock at
Message-ID: < at>
Content-Type: text/plain; charset=us-ascii


I was wondering if you had managed to output these contacts list as I too am
having problems actually saving these lists?

Many Thanks


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Message: 2
Date: Thu, 03 Jan 2002 11:40:07 +0530
From: Mahesh <vmahesh at>
Subject: ADL: Error in Edit -> bonds -> remove bonds
To: autodock at
Message-ID: <3C33F5BF.1030502 at>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed

Dear all,

I want to remove bonds from Cycle ring by using Edit -> bonds -> remove 
bonds with  clicking left button in mouse but its not removing any bonds 
, could someone help me solve this problem.



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