ADL: About adding hydrogens for Vina docking

Sabri Alpaydın sabrialp at
Sat Feb 1 07:58:45 PST 2014

Hello. I am using autodock Vina. I get different results when I am docking
the protein to ligand with all hydrogens or only polar hdyrogens. Which one
do I have to choose? Which is the best right way for ligand and protein
 for docking.
I look forward to hearing from you.
Thanks in advance for your answers.

*Assoc. Prof. Dr. Sabri ALPAYDIN*
Necmetttin Erbakan University
Ahmet Keleşoğlu Faculty of Education
Department of Chemical Education
42090 Meram/KONYA

0332 323 82 20/5494
0505 346 68 66
e-mail: sabrialp at
<salpaydin at>

More information about the autodock mailing list