ADL: Few More Questions

Arjun Subramaniam arjunsubway at gmail.com
Sun Feb 23 14:51:55 PST 2014


One more thing - What is a *good *binding affinity? I realize this is
subjective, but at what minimum binding affinity could a small molecule be
considered a viable drug target?


On Sun, Feb 23, 2014 at 2:28 PM, Arjun Subramaniam <arjunsubway at gmail.com>wrote:

> Hello,
>
> I had a few more questions regarding the Autodock software.
>
> 1. I am working with this protein here (
> http://www.rcsb.org/pdb/explore/explore.do?structureId=1IYT ). However,
> when I upload it to Autodock, it shows me 10 different models, and I am
> only allowed to use one. Is there anyway I can conduct the docking studies
> on the whole protein without having to choose a specific model?
>
> 2. I have also read that while Vina is very reliable, it is always good to
> back it up with other tests. What would you recommend to follow up the Vina
> results with?
>
> Thanks for your time.
>
> --
> Do or do not. There is no try - Master Yoda
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>



-- 
Do or do not. There is no try - Master Yoda


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