ADL: autodock Digest, Vol 130, Issue 6

suniba suniba88chemistry at gmail.com
Sat Jun 13 21:23:57 PDT 2015


Hello
Open your dlg file by using analyze option in autodock. Then open macromolecule (the protein). Now you can view conformations ranked by energy. When the dialogue bix appears, click in & key and then click on build H-bonds and show info option. You will get all the information. If you still have doubt you can ask. 
Suniba
PhD Student

Sent from my iPhone

> On 13-Jun-2015, at 12:30 am, autodock-request at scripps.edu wrote:
> 
> Send autodock mailing list submissions to
>   autodock at scripps.edu
> 
> To subscribe or unsubscribe via the World Wide Web, visit
>   http://mgldev.scripps.edu/mailman/listinfo/autodock
> or, via email, send a message with subject or body 'help' to
>   autodock-request at scripps.edu
> 
> You can reach the person managing the list at
>   autodock-owner at scripps.edu
> 
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of autodock digest..."
> 
> 
> Today's Topics:
> 
>  1.  question (dina dehghanian)
> 
> 
> ----------------------------------------------------------------------
> 
> Message: 1
> Date: Fri, 12 Jun 2015 07:13:59 +0000 (UTC)
> From: dina dehghanian <dina.dehghanian at yahoo.com>
> Subject: ADL: question
> To: "autodock at scripps.edu" <autodock at scripps.edu>
> Message-ID:
>   <1589869071.1885217.1434093239567.JavaMail.yahoo at mail.yahoo.com>
> Content-Type: text/plain; charset=UTF-8
> 
> 
> 
> Hi
> 
> I have done docking of ligand and protein as in video tutorial provided by web site, 
> and in my log file I see? just the energy affinity of some best interaction modes of them.Which kind of other information I could get from docking? for example about from which part protein
> is attached to the ligand? and so on.
> I see in the paper, authors get many information from docking results, but I do not know how can I
> analyzed my docking results?
> I highly appreciate if you help me
> regards
> 
> 
> 
> 
> 
> 
> ------------------------------
> 
> ________________________________________________
> --- ADL: AutoDock List  --- http://www.scripps.edu/pub/olson-web/doc/autodock/ ---
> 
> End of autodock Digest, Vol 130, Issue 6
> ****************************************



More information about the autodock mailing list