ADL: Dear members

halim saadi h.hocine.saadi at
Sun Sep 27 06:18:16 PDT 2015

i think we can parallelize the docking on GPU instead of CPU , i mean
instead of execution on one  processor or tow we can do it in thousand of
smal processor, and in this cas we have to modify the source code .

farzaneh mohamadyar we can work together if u want , i'm new tow in this

2015-09-27 14:08 GMT+01:00 LINA MARCELA PEDRAZA CASTILLO <
lmpedrazac at>:

> You can do it without changing any source codes. It runs one docking at
> time but you can set all the dockings you want to do, and then leave  and
> do whatever you want. You just have to modify the path on your computer and
> write a batch file with the commands you want to do.
> I hope you understand my poor english...
> 2015-09-27 7:07 GMT-05:00 farzaneh mohamadyar <f.mohamadyar at>:
> > Dear members,
> >
> > I am a biologist working on drug design. I've just started to study the
> > source programs of Auto Dock Vina، as I would like to use it in a
> research.
> > I'm writing to you because I wonder if it is possible to parallelize the
> > software. I mean can I change the source codes such that I could do n
> > number of docking for n number of drugs at the same time.
> >
> > I appreciate your consideration and look forward to hearing from you.
> > Sincerely
> > ________________________________________________
> > --- ADL: AutoDock List  --- ---
> ________________________________________________
> --- ADL: AutoDock List  --- ---

Hocine Saadi
Chargé d’études au CERIST (CEntre de Recherche en l'Information
Scientifique et Technique)
Division Théorie et Ingénierie des Systèmes Informatiques (DTISI)
03, Rue frères Aissiou - Ben Aknoun - Alger
Ingénieur en Informatique (USTHB)
Doctorant à l'Université El Djilali Liabès de sidi bel abbès
Réseaux et Systèmes Distribués
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