ADL: problem with running the example from video tutorial

maria timoshik m.timoshik at yandex.ru
Thu Mar 24 01:27:28 PDT 2016


Hello, Vina advanced users:
I have a problem trying to repeat video tutorial for AutoDock Vina step by step.
I have downloaded mgltools_win32_1.5.6_Setup.exe.  
After opening protein.pdb in ADT I'm not able to convert it into protein.pdbqt 
After Grid->Macromolecule->Choose->protein (select molecule)
I receive IndexError: list index out of range (full text or error massage see below)

How should I to proceed?
With regards, Maria

Python 2.5.2 (r252:60911, Feb 21 2008, 13:11:45) [MSC v.1310 32 bit (Intel)] on win32
Type "copyright", "credits" or "license()" for more information.

    ****************************************************************
    Personal firewall software may warn about the connection IDLE
    makes to its subprocess using this computer's internal loopback
    interface.  This connection is not visible on any external
    interface and no data is sent to or received from the Internet.
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IDLE 1.2.2      ==== No Subprocess ====
>>> Exception in Tkinter callback
Traceback (most recent call last):
  File "C:\Program Files (x86)\MGLTools-1.5.6\lib\lib-tk\Tkinter.py", line 1403, in __call__
    return self.func(*args)
  File "C:\Program Files (x86)\MGLTools-1.5.6\lib\site-packages\AutoDockTools\autogpfCommands.py", line 4479, in chooseMolecule_cb
    mol = self.chooser.getMolSet()
  File "C:\Program Files (x86)\MGLTools-1.5.6\lib\site-packages\Pmv\guiTools.py", line 178, in getMolSet
    if self.mode=='single': return mols[0]
  File "C:\Program Files (x86)\MGLTools-1.5.6\lib\UserList.py", line 28, in __getitem__
    def __getitem__(self, i): return self.data[i]




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