ADL: Question about Autodock Vina counter ions

Tye Martin tmarti16 at unm.edu
Fri Mar 25 10:09:15 PDT 2016


Hello,

I was wondering if Vina uses any kind of counter ions during the simulation process? I study charged ligand-protein systems and use counter ions during molecular dynamics simulations, so I was just curious if docking does something similar by default.

Thank you.



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