ADL: ligand structure is getting broken
diogo.stmart at gmail.com
Wed Jan 24 11:19:02 PST 2018
It looks like pymol did not draw the bonds betwen some atoms, probably it's
just a visualization problem.
Other molecular viewers may display the same molecule correctly.
On 24 January 2018 at 01:43, abhisek Mondal <abhisek.mndl at gmail.com> wrote:
> I'm trying to dock a ligand with a DNA. But whenever I'm saving the pdbqt
> file of the ligand from AutoDockTools, the chain is getting broken. I'm not
> being able to understand what wrong is happening in this step.
> Please help me out here.
> Ligand file: https://drive.google.com/file/d/
> Image file of broken .pdbqt:
> Thank you.
> Abhisek Mondal
> *Senior Research Fellow*
> *Structural Biology and Bioinformatics Division*
> *CSIR-Indian Institute of Chemical Biology*
> *Kolkata 700032*
> --- ADL: AutoDock List --- http://autodock.scripps.edu/mailing_list ---
More information about the autodock