ADL: pdbqt to pdb

Sundar jubilantsundar at gmail.com
Thu Jan 25 08:49:12 PST 2018


Thanks for the suggestions.

@Waldo, That's what I do if I am working on a few compounds. I my case I
want to batch convert a few hundred compounds.
@Stefano, This will hopefully serve the purpose. I will try that.
@Dr. Sakura, This is what I have done before but a few compounds are broken
into pieces.

-Sundar

On Thu, Jan 25, 2018 at 1:37 AM, dr. sakura <lalehan.ozalp at gmail.com> wrote:

> Hello,
>
> If you're using Linux, you can just enter this command:
>
> cut -c-66 my_docking.pdbqt > my_docking.pdb
>
> It worked well for me.
>
> Source: http://autodock.scripps.edu/faqs-help/faq?full=1
>
>
>
>
>
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>
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