ADL: general help with docking

Muzaffar Rehman m.muzaffar687 at
Tue Apr 7 10:19:08 PDT 2020

Where are facing the problem?

I can guide you step wise

On Tue, 7 Apr 2020 20:56 Sapir Yaar Bar, <sapiry at> wrote:

> Hello,
> I'm new to this list (and to be honest I'm not really sure how this works)
> or at docking generally, and I would love for some help.
> I've been trying to protein-ligand docking using autodock 4 (I downloaded
> autodock 4, autogrid, autodock tools). I tried to learn it online using
> websites and youtube videos, but every time I encounter a different
> problem. Sometimes it's the files, sometimes the grid box or the run auto
> grid option.
> Anyway, I'm at a point where everything that I try is not helping and I'm
> really lost.
> If any of you have extra time to help me overcome some of the obstacles I
> would be really grateful (apparently it's not so easy learning it from
> scratch).
> Thank you very much,
> Sapir
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