ADL: Autodock/Vina plugin and python version ; was: Re: Applying grid box for twisting protein
diogo.stmart at gmail.com
Fri Apr 10 12:17:01 PDT 2020
Hello, unfortunately I don't know of any workaround.
On Fri, 10 Apr 2020 at 11:18, Jorge Iulek <iulek at uepg.br> wrote:
> Dear Diogo,
> To get into the thread, to my humble knowledge this plugin
> works within python 2.7, is there a workaround when pymol runs under
> python 3.6?
> > The box can't be rotated, but the protein can. In Pymol, you can change
> > mouse mode to "3-button-editing" at the bottom right corner of the Pymol
> > window, and use shift+left click to rotate your protein. Then you can
> > the new coordinates (File->Save Molecule). There's an Autodock/Vina
> > to show a grid box.
> > On Fri, 10 Apr 2020 at 10:01, Leo Juhlin <leojuhlin at gmail.com> wrote:
> >> I have a twisting protein that I want to dock a molecule on. However, as
> >> you can see in the picture below, the applied grid box is not parallel
> >> the leaning protein, which means that I have to make the grid box a lot
> >> bigger in order to fit the residues between the twisting chains. Is
> >> any way to adjust the grid box or the protein so that they are aligned?
> >> https://imgur.com/a/qISzPKI
> >> ________________________________________________
> >> --- ADL: AutoDock List --- http://autodock.scripps.edu/mailing_list
> > ________________________________________________
> > --- ADL: AutoDock List --- http://autodock.scripps.edu/mailing_list ---
> --- ADL: AutoDock List --- http://autodock.scripps.edu/mailing_list ---
More information about the autodock