ADL: Program closes when trying to run a ligand-protein docking in Autodock Vina

Cesar Millan-Pacheco cmp at
Sun Apr 26 10:53:26 PDT 2020

Hi, you should include more information about your system:

a) which operating system?
b) how do you run it?
c) have you tried any other system?


César Millán Pacheco
Facultad de Farmacia
Universidad Autonoma del Estado de Morelos
Tel: 777 3297020
Fax: 777 3207040
email: cmp at
          c <pachequin at>esar.millanp at

On Sun, Apr 26, 2020 at 12:43 PM 724372 <724372 at> wrote:

> Hello, first of all Im not really sure wether this is the right place to
> send my question. My problem is that when I try to run a molecular
> docking with a ligand and a protein with Autodock Vina through the cmd
> (running it as an Admin), for certain ligands it works perfectly but for
> others when the program says: "Analyzing the Binding Site" the window
> just closes and it has only generated a log.txt file without the modes,
> neither it generates a .pdbqt file with the ligand adjusted. What is it
> happening and how do I solve it?
> Thank you very much.
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