ADL: Virtual screening using autodock vina
diogo.stmart at gmail.com
Mon Apr 27 09:56:19 PDT 2020
The mailing list does not support attachments, can you upload them and
share a link? (e.g. to google drive)
On Mon, 27 Apr 2020 at 03:27, Hiteshree Buch <hiteshreebuch1996 at gmail.com>
> I have been using autodock vina on windows 10 and ubuntu using vina
> manual. Also, in ubuntu I had run shell script for virtual screening but
> unfortunately in both the ways I got no results. As docking starts, it
> stops at the step “Performing search” (it just sticks at 0) and hence
> docking couldn’t proceed. I have kept it for 6-8 hours but it hasn’t even
> shifted from 0 to 10.
> I have tried to do protein-ligand docking and also virtual screening of
> one protein with 25 ligands, but at same stage it stops. What should I do?
> I am attaching a screenshot of what has happened and also the shell
> Kindly suggest a way to get rid of this problem.
> Thanks in advance.
> Hiteshree Buch
> ---------- Forwarded message ----------
> From: DG-Exchange Postmaster <postmaster at scripps.edu>
> To: lab mailing list on mgl2 <autodock at scripps.edu>
> Date: Mon, 27 Apr 2020 15:55:53 +0530
> Subject: vina_screen_local_sh
> Attachment Notice
> The following attachment was removed from the associated email message.
> File Name
> File Size
> 199 Bytes
> Attachment management policies limit the types of attachments that are
> allowed to pass through the email infrastructure.
> Attachments are monitored and audited for security reasons.
> --- ADL: AutoDock List --- http://autodock.scripps.edu/mailing_list ---
More information about the autodock