ADL: Question about docking molecules alongside an endogenous ligand (Vina)

Matt K. 5xx7xx at
Fri Aug 14 20:18:38 PDT 2020

I have a protein with an endogenous ligand which is so highly abundant that
I have little chances of outperforming it with a drug. Can I leave it in
place and dock other molecules next to it with Vina? Or is the software not
designed to predict poses in such a system?

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