ADL: (no subject)

Susantha Ganegamage susanthakgg at gmail.com
Sat May 16 09:38:21 PDT 2020


It will not generate a grid (.gpf) file automatically. You have to create
it.

On Sat, 16 May 2020 at 10:30, Susantha Ganegamage <susanthakgg at gmail.com>
wrote:

> Hi Dr.Ujjalkumar,
>
> It will not generate grid (.gpf) file by yourself. For that you have to
> create a grid box using grid option then File---> close save window with
> saving. Then go to grid and grid output then save the output file.
> Everytime you run auto grid you have to brows and specify the grid.exe
> location file and grid parameter file (.gpf). Then run the grid. You should
> be able to create grid output files.
>
> Thanks,
>
> Susantha
>
> On Sat, 16 May 2020 at 08:47, ujjwalkumar das <ujjwal87kumar at gmail.com>
> wrote:
>
>> Dear Susantha,  thank you for your reply.
>>
>> I am not able to generate grid file map file although I am following the
>> protocol strictly.  What could be the problem?
>>
>> On Sat, May 16, 2020, 19:14 Susantha Ganegamage <susanthakgg at gmail.com>
>> wrote:
>>
>> > Hi Dr.Ujjalkumar,
>> >
>> > First, run the auto grid successfully, The log file generated should
>> > mention the process flow and different types of map files should be
>> > generated if the process was successful.
>> >
>> > If you could run auto grid successfully, there should not be any error
>> in
>> > running auto dock.
>> >
>> > Thanks,
>> >
>> > Susantha Ganegamage
>> >
>> > On Sat, 16 May 2020 at 06:03, ujjwalkumar das <ujjwal87kumar at gmail.com>
>> > wrote:
>> >
>> > > Dear Sir/Ma'am,
>> > >
>> > > I hope this email finds you well.
>> > >
>> > > I am using Autodock 4.2 with ADT tools for molecular docking studies.
>> > While
>> > > doing the study, i found results from it are not generated. Docking is
>> > not
>> > > generating any .glg files. When i looked cmd window, it was showing
>> the
>> > > error.
>> > >
>> > > [image: image.png]
>> > >
>> > > I would be obliged if you can suggest help in this regards.
>> > >
>> > > Thanking you.
>> > >
>> > > Regards
>> > > *Dr. Ujjalkumar S Das*
>> > > Research Associate
>> > > Ocular Pharmacology & Pharmacy
>> > > Dr. RP Center for Ophthalmic Sciences,
>> > > All India Institute of Medical Sciences, New Delhi
>> > > ________________________________________________
>> > > --- ADL: AutoDock List  --- http://autodock.scripps.edu/mailing_list
>> ---
>> > ________________________________________________
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>> >
>> >
>> ________________________________________________
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>>
>>


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